vbspt hmm analysis (SourceForge net)
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Vbspt Hmm Analysis, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
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1) Product Images from "Recapitulation of cell-like KRAS4b membrane dynamics on complex biomimetic membranes"
Article Title: Recapitulation of cell-like KRAS4b membrane dynamics on complex biomimetic membranes
Journal: iScience
doi: 10.1016/j.isci.2021.103608
Figure Legend Snippet: The three-state diffusion model for KRAS4b on supported lipid bilayer yielded by the Hidden Markov Modeling (HMM) analysis using vbSPT software (A) KRAS4b loaded with GDP on eight-lipid bilayer. (B and C) (B) KRAS4b loaded with GppNHp on simple POPC/POPS (87/13) bilayer (C)) KRAS4b loaded with GppNHp on eight-lipid bilayer. D1 (green), D2 (orange), and D3 (red) represent the fast, intermediate, and slow state, respectively. The circle represents the fractional occupancy of each state, τ i represents the dwell time in each state and the arrows represent transition between states. The diameter of the circle and the width of the arrows are drawn in proportion to their relative values.
Techniques Used: Diffusion-based Assay, Software
Figure Legend Snippet: KRAS4b diffusion on the modified eight-lipid bilayer (A–D) Cumulative probability distribution (CPD) and Hidden Markov Modeling (HMM) analysis of KRAS4b tracks obtained on (A and C) 7-lipids without PIP2 and (B and D) 6-lipids without cholesterol and sphingomyelin. The insets represent the mean-square displacement (MSD) plots of the individual components identified by CPD analysis.
Techniques Used: Diffusion-based Assay, Modification
Figure Legend Snippet:
Techniques Used: Recombinant, Single-particle Tracking, Software